New York's governor Andrew Cuomo is under scrutiny. Federal prosecutors are looking into allegations that his administration interfered with its own anti-corruption commission. Cuomo abruptly disbanded the commission earlier this year. Now federal prosecutors are warning Cuomo not to interfere with their investigation as NPR's Joel Rose reports.

JOEL ROSE, BYLINE: Gov. Andrew Cuomo swept into office, promising to clean up a state government so corrupt, he once described it as a joke. Now Cuomo himself has become the punch line. Here's how Jon Stewart of "The Daily Show" summed up the scandal.


JON STEWART: Basically, Cuomo formed a commission promising - you can even look at me. And then, when they looked at him, he said, you looking at me?

ROSE: Cuomo created the so-called Moreland Commission last year to root out corruption in Albany. Here he is on radio station WCNY in December.


GOVERNOR ANDREW CUOMO: The commission clearly has the legal authority to look at anything they want to look at - the governor, the attorney general, the controller, etc.

ROSE: But Cuomo abruptly disbanded that commission in March with no major prosecutions. There were allegations at the time that the Cuomo administration tried to interfere with the commission's work - that he denied them, saying quote, "I can't interfere with it because it is mine. It is controlled by me," unquote. Then, just last week, the New York Times reported that Cuomo's Chief of Staff ordered the commission to withdraw subpoenas targeting some of the governor's political supporters. Cuomo didn't appear in public for five days. When he reemerged on Monday, Cuomo explained that his administration had conversations with the commission.


CUOMO: Well, of course there's going to be back-and-forth - that's fine. Interference is different.

ROSE: The governor defended his administration's handling of the commission, pointing repeatedly to a letter released also on Monday by the panel's co-chair, William Fitzpatrick.


CUOMO: He says there was no interference whatsoever. If anyone tried to interfere with me, I would have quit. We were wholly independent.

ROSE: But Cuomo's shifting positions may have only made him look worse - that's according to Jeanna Zaino, who teaches political science at Iona College.

JEANNA ZAINO: It becomes a really difficult trail of explanations to follow and it leaves you wondering, if you're paying attention to this, what's the truth of this thing? And you feel, at least I was left feeling that we didn't quite get the truth from him.

ROSE: Cuomo's political rivals are trying to capitalize on that perception. And they need all the help they can get if they're going to unseat the popular and well-funded governor in his reelection bid this fall. Republican challenger Rob Astorino tried to summon visions of Tammany Hall by holding a press conference on the steps of the Tweed Courthouse yesterday in Manhattan.


ROB ASTORINO: Nothing says corruption like the Tweed Courthouse. I mean, this is the stain that was New York. We now have a new stain in Albany.

ROSE: Cuomo's opponents on the left are also attacking him over ethics. Zephyr Teachout is a Fordham University law professor who's challenging Cuomo on the Democratic primary ballot in September.


ZEPHYR TEACHOUT: The basic obligation of leadership is to take action and then explain yourself, and he has failed to explain himself for now over a week. That's the actions of somebody who's scared, who knows that there might be something quite dangerous here for his political future.

ROSE: No one in the Cuomo administration has been charged with a crime, but the U.S. Attorney in New York, Preet Bharara, is investigating how the commission was disbanded and has already taken over its work.

Late yesterday, Bharara sent a sharply-worded letter to the former commissioners, threatening to investigate the Cuomo administration for possible obstruction of justice or witness tampering.

Joel Rose, NPR News, New York.

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